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Bioconductor Changlog.
Tue, 01 Apr 2008
AnnotationDbi
Modifications to Plasmodium falciparum man pages.
Corrects bugs that would otherwise be found in the Plasmodium
falciparum man pages for packages that get produced using this.
[/AnnotationDbi] permanent link
flowViz
improvements to the timeLine plots
affyPLM
(1.15.9) rma background correction code from preprocessCore is now used
source files rma_background2.c and rma_background2.h have been removed
Rdisop
Bump Version for BioC 2.2 includion
Biostrings
Added the "alphabet" method for "XStringSet" objects + a few additions to the TODO file. Version bumped to 2.7.42.
GSEAlm
GSEAlm 0.99.1: trimmed dependencies to bare minimum
oneChannelGUI
Correcting little bugs in limma Toptable for Illumina data
[/oneChannelGUI] permanent link
Category
fixed a bug reported by Paul Evans, where a zero-length list of categories
induced a whole bunch more zero length vectors and caused no end of problems
with computation of the odds ratio etc
preprocessCore
(1.1.7) Fix background function bindings (for use by other packages). The implementation themselves is unchanged.
(1.1.6) Addition of PLM-r and PLM-d
Adjust rcModelPLM so that it takes optional row-effect estimates
quantile normalization functions normalize.quantiles(), normalization.quantiles.determine.target(),normalize.quantiles.use.target() all now have multi-threaded support, user controlled using the R_THREADS environment variable
Move weightedkerneldensity.c from affyPLM to preprocessCore
subColSummarize* functions all now have basic multi-threaded support, user controlled using the R_THREADS
[/preprocessCore] permanent link