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Bioconductor Changlog.
Thu, 27 Mar 2008
flowViz
an improved framework to add gates to plots for both the base graphics and the lattice world
added lines and polygon methods (glines, gpolygon for now) that allow for adding of gates to existing plots
GSEABase
mapIdentifiers,GeneColorSet,*-methods exception test and tidy
- new unit test
- revised error message on failure
- tidy of mapIdentifiers man page
implement mapIdentifiers,GeneColorSet,*-methods
- account for many-to-1, 1-to-0, 1-to-many mappings with gene- and
phenotype colors
Correctly check for existence of generics before creating getter and
setter methods
- 'Getters' and 'setters' were creating a generic because none existed
in the package namespace, but should have been checking on the
package search path (no 'where' argument in 'isGeneric').
BCRANK
Fixed uninitialized variable in C code
Biostrings
added the lettersToAmbiguity() utility function
Fixed "reduce" method for .IRanges objects and "mask" method for IRanges objects (both were broken on .IRanges/IRanges objects with names). Version bump.
SLGI
bump version number for Bioc2.2 release