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Wed, 26 Mar 2008
MLInterfaces
testScores for xval MLearn illustrated in classifierOutput man page
[/MLInterfaces] permanent link
flowViz
added lines and polygon methods (glines, gpolygon for now) that allow for adding of gates to existing plots
rsbml
Do not use any extern declarations for the StringMap stuff.
limma
26 March 2008: limma 2.13.7
- the function rlm.series(), deprecated in 2004, is now removed
- add comments in the geneSetTest help file to warn that the
test assumes genewise independence.
cellHTS2
Minor change to vignette to get the package to build on Windows.
Ringo
consistently replaced misleading term 'peak' by more appropriate one 'ChIP-enriched region'
GLAD
Fixed image key in arrayPlot.arrayCGH() function. This was causing problems for the MANOR package.
goTools
Fixed unmatched parentheses and removed debug print statements.
GEOquery
Fixed some problems with vignette and added comments about raw data download
explorase
Remove require(limma) call (we now import limma), remove exp_loadNetwork
(for now) and make exp_brushColor non-public (now called
getBrushColor).
GSEAlm
Version number bump to prepare this package for release.
MANOR
Fixed issue related to an error as well as added descriptions to help files to remove warnings.
XDE
corrected a small typo in xdeLIN.pdf
Implemented delta_{gp}
GlobalAncova
updated references
[/GlobalAncova] permanent link