Bioconductor Changelog

Bioconductor Changelog

	About Click here to learn more about this blog. Packages Click on a link for updates to that package only. ABarray ACME AffyCompatible AffyExpress AnnBuilder AnnotationDbi ArrayExpress BAC BCRANK BGmix BSgenome BioMVCClass Biobase BiocCaseStudies Biostrings BiostringsCinterfaceDemo BufferedMatrix BufferedMatrixMethods CALIB CGHbase CGHcall CGHregions CMA CORREP Category CoCiteStats DEDS DFP DNAcopy DynDoc EBImage EBarrays GEOmetadb GEOquery GGBase GGtools GLAD GOstats GSEABase GSEAlm GeneMeta GeneR GeneRfold GeneSelector GeneSpring GeneTraffic GeneticsBase GeneticsDesign GeneticsPed GenomeGraphs GlobalAncova GraphAT GraphAlignment HELP HEM Harshlight Heatplus HilbertCurveDisplay ITALICS Icens KEGGSOAP LBE LMGene LPE LPEadj MANOR MCRestimate MLInterfaces MVCClass MantelCorr MassSpecWavelet MeasurementError.cor MergeMaid Mfuzz MiPP OCplus OLIN OLINgui OrderedList OutlierD PCpheno PGSEA PROcess RBGL RBioinf RLMM RMAGEML ROC RSNPper RWebServices RankProd Ratlpow RbcBook1 Rdbi RdbiPgSQL Rdisop RefPlus Resourcerer Rgraphviz Ringo Rintact RpsiXML Rredland Rtreemix Ruuid SAGx SBMLR SIM SLGI SLqPCR SMAP SNPchip ScISI SemSim ShortRead TypeInfo VanillaICE XDE aCGH adSplit affxparser affy affyPLM affyPara affyQCReport affycomp affycoretools affyio affylmGUI affypdnn altcdfenvs annaffy annotate annotationTools apComplex aroma.light arrayMagic arrayQuality arrayQualityMetrics beadarray beadarraySNP bgafun bgx bioDist biocGraph biocViews biomaRt bridge buildBioC cellHTS cellHTS2 cghMCR clusterStab codelink convert copa cosmo cosmoGUI ctc daMA diffGeneAnalysis dualKS ecolitk edd exonmap explorase externalVector factDesign fbat fdrame flowClust flowCore flowDB flowQ flowUtils flowViz gaga gaggle gcrma genArise geneRecommender genefilter geneplotter globaltest goCluster goProfiles goTools gpls graph hexbin hopach hypergraph idiogram impute iterativeBMA iterativeBMAsurv keggorth lapmix limma limmaGUI logicFS lumi maCorrPlot maDB maSigPro maanova macat made4 maigesPack makePlatformDesign makecdfenv marray matchprobes mdqc metaArray miRNApath minet multiscan multtest ncdfExts nem nnNorm nudge occugene oligo oligoClasses oneChannelGUI ontoTools pairseqsim pamr panp pathRender pcaMethods pcot2 pdInfoBuilder pdmclass pgUtils pickgene pkgDepTools plateCore plgem plier plw ppiStats prada preprocessCore prism puma quantsmooth qvalue rHVDM rama rbsurv reb rflowcyt rhdf5 rsbml rtracklayer safe sagenhaft seqLogo sigPathway siggenes simpleaffy simulatorAPMS sizepower smoothMiner snapCGH snpMatrix spikeLI spkTools splicegear splots spotSegmentation sscore ssize stam stepNorm tilingArray timecourse tkWidgets topGO twilight vbmp vsn weaver webbioc widgetInvoke widgetTools xcms xcmsGUI xps yaqcaffy Subscribe Subscribe to the Bioconductor Changlog.	Tue, 25 Mar 2008 AnnotationDbi Updates to Documentation. This updates the main vignette for AnnotationDbi with more examples, and also updates the man pages for the homology package so that users will in future know where the inparanoid abbreviations come from. [/AnnotationDbi] permanent link flowViz changing some default colors for things [/flowViz] permanent link factDesign House Cleaning: Removing INDEX files from svn. These files are created in the build process and shouldn't be version controlled. [/factDesign] permanent link genArise House Cleaning: Removing INDEX files from svn. These files are created in the build process and shouldn't be version controlled. [/genArise] permanent link affyPLM House Cleaning: Removing INDEX files from svn. These files are created in the build process and shouldn't be version controlled. [/affyPLM] permanent link qvalue House Cleaning: Removing INDEX files from svn. These files are created in the build process and shouldn't be version controlled. [/qvalue] permanent link spotSegmentation House Cleaning: Removing INDEX files from svn. These files are created in the build process and shouldn't be version controlled. [/spotSegmentation] permanent link arrayQuality House Cleaning: Removing INDEX files from svn. These files are created in the build process and shouldn't be version controlled. [/arrayQuality] permanent link nnNorm House Cleaning: Removing INDEX files from svn. These files are created in the build process and shouldn't be version controlled. [/nnNorm] permanent link GeneR House Cleaning: Removing INDEX files from svn. These files are created in the build process and shouldn't be version controlled. [/GeneR] permanent link Rdbi House Cleaning: Removing INDEX files from svn. These files are created in the build process and shouldn't be version controlled. [/Rdbi] permanent link rama House Cleaning: Removing INDEX files from svn. These files are created in the build process and shouldn't be version controlled. [/rama] permanent link pickgene House Cleaning: Removing INDEX files from svn. These files are created in the build process and shouldn't be version controlled. [/pickgene] permanent link sagenhaft House Cleaning: Removing INDEX files from svn. These files are created in the build process and shouldn't be version controlled. [/sagenhaft] permanent link DNAcopy House Cleaning: Removing INDEX files from svn. These files are created in the build process and shouldn't be version controlled. [/DNAcopy] permanent link multtest House Cleaning: Removing INDEX files from svn. These files are created in the build process and shouldn't be version controlled. [/multtest] permanent link gaga House Cleaning: Removing INDEX files from svn. These files are created in the build process and shouldn't be version controlled. [/gaga] permanent link twilight House Cleaning: Removing INDEX files from svn. These files are created in the build process and shouldn't be version controlled. [/twilight] permanent link Rdisop House Cleaning: Removing INDEX files from svn. These files are created in the build process and shouldn't be version controlled. [/Rdisop] permanent link lapmix House Cleaning: Removing INDEX files from svn. These files are created in the build process and shouldn't be version controlled. [/lapmix] permanent link GeneTraffic House Cleaning: Removing INDEX files from svn. These files are created in the build process and shouldn't be version controlled. [/GeneTraffic] permanent link RdbiPgSQL House Cleaning: Removing INDEX files from svn. These files are created in the build process and shouldn't be version controlled. [/RdbiPgSQL] permanent link ctc House Cleaning: Removing INDEX files from svn. These files are created in the build process and shouldn't be version controlled. [/ctc] permanent link altcdfenvs Fixed the CITATION. [/altcdfenvs] permanent link RMAGEML House Cleaning: Removing INDEX files from svn. These files are created in the build process and shouldn't be version controlled. [/RMAGEML] permanent link sizepower House Cleaning: Removing INDEX files from svn. These files are created in the build process and shouldn't be version controlled. [/sizepower] permanent link OutlierD House Cleaning: Removing INDEX files from svn. These files are created in the build process and shouldn't be version controlled. [/OutlierD] permanent link MiPP House Cleaning: Removing INDEX files from svn. These files are created in the build process and shouldn't be version controlled. [/MiPP] permanent link makecdfenv House Cleaning: Removing INDEX files from svn. These files are created in the build process and shouldn't be version controlled. [/makecdfenv] permanent link gcrma House Cleaning: Removing INDEX files from svn. These files are created in the build process and shouldn't be version controlled. [/gcrma] permanent link impute House Cleaning: Removing INDEX files from svn. These files are created in the build process and shouldn't be version controlled. [/impute] permanent link GeneRfold House Cleaning: Removing INDEX files from svn. These files are created in the build process and shouldn't be version controlled. [/GeneRfold] permanent link MergeMaid House Cleaning: Removing INDEX files from svn. These files are created in the build process and shouldn't be version controlled. [/MergeMaid] permanent link rhdf5 House Cleaning: Removing INDEX files from svn. These files are created in the build process and shouldn't be version controlled. [/rhdf5] permanent link GLAD House Cleaning: Removing INDEX files from svn. These files are created in the build process and shouldn't be version controlled. [/GLAD] permanent link SAGx House Cleaning: Removing INDEX files from svn. These files are created in the build process and shouldn't be version controlled. [/SAGx] permanent link splicegear Changed usage of defunct class phenoData to AnnotatedDataFrame. [/splicegear] permanent link goTools House Cleaning: Removing INDEX files from svn. These files are created in the build process and shouldn't be version controlled. [/goTools] permanent link hopach House Cleaning: Removing INDEX files from svn. These files are created in the build process and shouldn't be version controlled. [/hopach] permanent link EBarrays House Cleaning: Removing INDEX files from svn. These files are created in the build process and shouldn't be version controlled. [/EBarrays] permanent link sscore House Cleaning: Removing INDEX files from svn. These files are created in the build process and shouldn't be version controlled. [/sscore] permanent link Icens House Cleaning: Removing INDEX files from svn. These files are created in the build process and shouldn't be version controlled. [/Icens] permanent link ecolitk House Cleaning: Removing INDEX files from svn. These files are created in the build process and shouldn't be version controlled. [/ecolitk] permanent link Mfuzz House Cleaning: Removing INDEX files from svn. These files are created in the build process and shouldn't be version controlled. [/Mfuzz] permanent link gpls House Cleaning: Removing INDEX files from svn. These files are created in the build process and shouldn't be version controlled. [/gpls] permanent link affxparser Added a check to make sure that the indices are sorted for now. The larger fix requires reading the file in a different way because of the linked list type setup. Or it requires a little bit of fixing up on the way out, which might be the appropriate way. [/affxparser] permanent link OLINgui House Cleaning: Removing INDEX files from svn. These files are created in the build process and shouldn't be version controlled. [/OLINgui] permanent link GSEAlm Added the package GSEAlm to Bioconductor. [/GSEAlm] permanent link PROcess House Cleaning: Removing INDEX files from svn. These files are created in the build process and shouldn't be version controlled. [/PROcess] permanent link RefPlus House Cleaning: Removing INDEX files from svn. These files are created in the build process and shouldn't be version controlled. [/RefPlus] permanent link bgx House Cleaning: Removing INDEX files from svn. These files are created in the build process and shouldn't be version controlled. [/bgx] permanent link xps Adding build support on Windows. Added specification of cl and link executables based on MSVSPATH environment variable. update config.win update to version xps-0.99.4 - updated files: config.win, findvc.pl Added support for builds on wellington. Adding support for Mac OS X build. [/xps] permanent link plgem fixed documentation bug (missing link to ExpressionSet class); overall improvement of help files and vignettes. [/plgem] permanent link OLIN House Cleaning: Removing INDEX files from svn. These files are created in the build process and shouldn't be version controlled. [/OLIN] permanent link HEM House Cleaning: Removing INDEX files from svn. These files are created in the build process and shouldn't be version controlled. [/HEM] permanent link pairseqsim House Cleaning: Removing INDEX files from svn. These files are created in the build process and shouldn't be version controlled. [/pairseqsim] permanent link goCluster House Cleaning: Removing INDEX files from svn. These files are created in the build process and shouldn't be version controlled. [/goCluster] permanent link daMA House Cleaning: Removing INDEX files from svn. These files are created in the build process and shouldn't be version controlled. [/daMA] permanent link MeasurementError.cor House Cleaning: Removing INDEX files from svn. These files are created in the build process and shouldn't be version controlled. [/MeasurementError.cor] permanent link rbsurv House Cleaning: Removing INDEX files from svn. These files are created in the build process and shouldn't be version controlled. [/rbsurv] permanent link apComplex House Cleaning: Removing INDEX files from svn. These files are created in the build process and shouldn't be version controlled. [/apComplex] permanent link