Bioconductor Changelog

Bioconductor Changelog

	About Click here to learn more about this blog. Packages Click on a link for updates to that package only. ABarray ACME AffyCompatible AffyExpress AnnBuilder AnnotationDbi ArrayExpress ArrayTools BAC BCRANK BGmix BSgenome BioMVCClass Biobase BiocCaseStudies Biostrings BiostringsCinterfaceDemo BufferedMatrix BufferedMatrixMethods CALIB CGHbase CGHcall CGHregions CMA CORREP Category CoCiteStats DEDS DFP DNAcopy DynDoc EBImage EBarrays GEOmetadb GEOquery GGBase GGexplorer GGtools GLAD GOstats GSEABase GSEAlm GeneMeta GeneR GeneRfold GeneSelector GeneSpring GeneTraffic GeneticsBase GeneticsDesign GeneticsPed GenomeGraphs GlobalAncova GraphAT GraphAlignment HELP HEM Harshlight Heatplus HilbertCurveDisplay HilbertVis HilbertVisGUI IRanges ITALICS Icens KEGGSOAP LBE LMGene LPE LPEadj MANOR MCRestimate MEDME MLInterfaces MVCClass MantelCorr MassSpecWavelet MeasurementError.cor MergeMaid Mfuzz MiPP OCplus OLIN OLINgui OrderedList OutlierD PCpheno PGSEA PLPE PROcess RBGL RBioinf RDocBook RLMM RMAGEML ROC RSNPper RWebServices RankProd Ratlpow RbcBook1 Rdbi RdbiPgSQL Rdisop RefPlus Resourcerer Rgraphviz Ringo Rintact RpsiXML Rredland Rrsat Rswub Rtreemix Ruuid SAGx SBMLR SIM SLGI SLqPCR SMAP SNPchip ScISI SemSim ShortRead TypeInfo VanillaICE XDE aCGH adSplit affxparser affy affyContam affyMvout affyPLM affyPara affyQCReport affycomp affycoretools affyio affylmGUI affypdnn altcdfenvs annaffy annotate annotationTools apComplex aroma.light arrayMagic arrayMvout arrayQuality arrayQualityMetrics beadarray beadarraySNP bgafun bgx bioDist biocGraph biocViews biomaRt bridge buildBioC cellHTS cellHTS2 cghMCR chipseq clusterStab codelink convert copa cosmo cosmoGUI ctc daMA diffGeneAnalysis domainsignatures dualKS ecolitk edd edgeR exonmap explorase externalVector factDesign fbat fdrame flowClust flowCore flowDB flowQ flowUtils flowViz gaga gaggle gcrma genArise geneRecommender genefilter geneplotter globaltest goCluster goProfiles goTools gpls graph hexbin hopach hypergraph idiogram impute iterativeBMA iterativeBMAsurv keggorth lapmix limma limmaGUI logicFS logitT lumi maCorrPlot maDB maSigPro maanova macat made4 maigesPack makePlatformDesign makecdfenv marray matchprobes mdqc metaArray miRNApath microRNA minet multiscan multtest ncdfExts nem nnNorm nudge occugene oligo oligoClasses oneChannelGUI ontoTools pairseqsim pamr panp parody pathRender pcaMethods pcot2 pdInfoBuilder pdmclass pgUtils pickgene pkgDepTools plateCore plgem plier plw ppiStats prada preprocessCore prism puma quantsmooth qvalue rHVDM rama rbsurv reb rflowcyt rhdf5 rsbml rtracklayer safe sagenhaft seqLogo sigPathway siggenes simpleaffy simulatorAPMS sizepower smoothMiner snapCGH snpMatrix spikeLI spkTools splicegear splots spotSegmentation sscore ssize stam stepNorm tilingArray timecourse tkWidgets topGO twilight vbmp vsn weaver webbioc widgetInvoke widgetTools xcms xcmsGUI xps yaqcaffy Subscribe Subscribe to the Bioconductor Changlog.	Sat, 22 Mar 2008 tkWidgets Replaced usage of defunct class phenoData with AnnotatedDataFrame. [/tkWidgets] permanent link oligoClasses Adding support to Affymetrix GeneST Arrays [/oligoClasses] permanent link EBImage Remove unused BioConductor build options file. [/EBImage] permanent link flowCore many little fixes fixed little spelling bug in read.FCS [/flowCore] permanent link pdInfoBuilder Adding support to Affymetrix GeneST Arrays [/pdInfoBuilder] permanent link BiostringsCinterfaceDemo added the BiostringsCinterfaceDemo package [/BiostringsCinterfaceDemo] permanent link Biostrings Added "chartr" method for XStringSet and BStringViews objects. Some small changes and additions to the C interface. Bumped version to 2.7.39. [/Biostrings] permanent link GeneRfold Removing support for building GeneRfold on Windows due to its reliance on ViennaRNA library. [/GeneRfold] permanent link vsn Fixed some wordings in a vignette. [/vsn] permanent link nudge Removed dependence on defunct package modreg. [/nudge] permanent link GEOquery Added support for supplemental file downloads for all GEO datatypes [/GEOquery] permanent link affxparser updated to Fusion 1.0.10b [/affxparser] permanent link explorase Removed dependence on gtkDevice in favor of X11(type = "cairo") from grDevices package. [/explorase] permanent link plgem added "plgem.pValue" function, to calculate p-values for given observed STN values. [/plgem] permanent link biomaRt Update of DESCRIPTION file [/biomaRt] permanent link prism Remove unused BioConductor build options file. [/prism] permanent link oligo Adding support to Affymetrix GeneST Arrays [/oligo] permanent link