About
Click here
to learn more about this blog.
Packages
Click on a link
for updates to that package only.
Subscribe
Subscribe to the
Bioconductor Changlog.
Thu, 20 Mar 2008
EBImage
I have:
- made some wording fixes in the vignettes
- added a TODO file with suggestions
- tried to make the "hist" method more useful
Biostrings
Added next_XStringSet_elt_asRoSeq() to the C interface and use it in C function XStringSet_char_frequency() to speedup "alphabetFrequency" methods for XStringSet objects (4x speedup). Bumped version to 2.7.38.
more small improvements to alphabetFrequency() based on Martin's feedback
small improvements to alphabetFrequency() based on Martin's feedback
[again] The additional 15x speedup for alphabetFrequency() on XStringSet objects when 'collapse' is TRUE turned out to be broken. Removed it.
No, the additional 15x speedup for alphabetFrequency() on XStringSet objects when collap
Fixed small problem in alphabetFrequency() when 'freq' is TRUE.
Polishing alphabetFrequency() for an additional speedup of 15x on XStringSet objects when 'collapse' is TRUE.
Reworked alphabetFrequency() (most of it is now done in C). The new implementation is > 250x faster on XStringSet objects.
rHVDM
added measurement error estimation module
DEDS
Minor change to vignette to get around MiKTeX bug on Windows.
affyio
(1.7.17) Minor fixes for CLF/PGF parsers
ppiStats
edits to estimateCCMErrorRates.R
I have added man pages and updated the dependencies and namespace to avoid cyclic dependencies