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Bioconductor Changlog.
Wed, 12 Mar 2008
AnnotationDbi
Removed code for redundant indices.
This removes many redundant indices from the SQLForge code. This
should reduce the size of the databases somewhat while not impacting
performance.
[/AnnotationDbi] permanent link
affyPLM
Use the recently added Rzlib library in R-devel on Windows.
gaggle
updated with workarounds for windows issues
updated to 1.7.1
makecdfenv
Use the recently added Rzlib library in R-devel on Windows.
hypergraph
Fixed a matrix subscripting bug and an unlist related warning.
gcrma
Fixed bug in justGCRMA() caused by changes to the API of rma_c_complete in the affy package.
cellHTS2
The assayData really needs to be "lockedEnvironment"!
Removed the requirement that all replicates and channels for all plates
need to be present.
Biostrings
bumped version to 2.7.32
Rintact
I have added a new function to parse the xml files
Ringo
improvements to functions for computing overlap between enriched regions and/or ovelap of genomic features and probe-mapped positions
affy
Use the recently added Rzlib library in R-devel on Windows.
splots
Removed dataset used in example only! Example with randomly generated data now.
Updated man pages
Replaced "boolean flag" with "Logical" in man page.
xcms
Use the recently added Rzlib library in R-devel on Windows.
affyio
Put back the -lz reference for referencing zlib for non-Windows (as opposed to -lRzlib) builds.
Updated reference to the zlib library to reflect recent changes in R-devel. In particular, -lz has become -lRzlib.
ppiStats
I have updated the depends field in the desc file