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Bioconductor Changlog.
Mon, 10 Mar 2008
limma
Correction to limma changelog.txt, still part of limma 2.13.6
8 March 2008: limma 2.13.6
- Bug fix when matrix data object passed to lmFit() containing
missing values. The check for log-intensities vs log-ratios
introduced 27 Oct 2007 did not remove missing values and
hence produced an error.
- New function getEAWP() introduced to unify the treatment of
different classes of microarray data objects as input to linear
model functions such as lmFit(), arrayWeights() and
printtipWeights().
- Class exprSet2 removed.
snapCGH
altered DNAcopy code to reflect changes in that package
vsn
Wee fix in formating of progress output.
The offset "hoffset" (called "c" in the vsn2 man page) is now computed
separately for each stratum, following a suggestion by Hans-Ulrich
Klein on the mailing list.
Biobase
(internal) checkClass now uses 'is', allowing, e.g., S3-style c("baz",
"data.frame") to be recognized as a data.frame