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Fri, 07 Mar 2008
MLInterfaces
updated for 2.7 R/.db etc.
[/MLInterfaces] permanent link
flowCore
update to documentation and addition of methods
genefilter
The distance computation in dist2 now has na.rm=TRUE.
logicFS
Added functions for a multinomial logic regression.
Biostrings
Updated the Depends and Suggests fields and changed the license from LGPL to Artistic-2.0.
Renamed IntIntervals class -> IRanges. Version bumped to 2.7.31
ArrayExpress
Does not replace 0 by NA anymore
?\195?\130add the phenoData
[/ArrayExpress] permanent link
BSgenome
changed the license from LGPL to Artistic-2.0
The buildDataFiles() function used for building BSgenome packages now puts "multiple" sequences in DNAStringSet objects instead of BStringViews objects. Updated Depends field and bumped the version.
affyio
(1.7.14) Better checking of potential CEL file corruption. Specifically some vales are now checked to see if they are sensible (ie intensity values should not be negative and x,y locations should not be negative or outside the chip dimensions)
arrayQualityMetrics
Fixed treatments of NAs (na.vomit vs na.rm) (made Audrey have an aching stomach)
Better computation of spatial effect statistics.
- CCl4 is suggested not required anymore
- Fix report title bug when the object are functions
[/arrayQualityMetrics] permanent link