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Bioconductor Changlog.
Tue, 04 Mar 2008
AnnotationDbi
Fixes a bad bug in SQLForge introduced by Refseq vers. #s
This adds some debug code, and also fixes a bad bug introduced when I
added code that attempts to automatically scrub version numbers from
[/AnnotationDbi] permanent link
logicFS
Besides using binary variables, factors can now also be used as predictors.
Ringo
improved handling of identified enriched regions and fixed bug introduced in previous version
Category
trying to move to the new DB packages, and added a NEWS file
SNPchip
changed description
added abline option for plotting
xcms
more robust MSn reading
more robust fillPeaks.mean
Remove documentation of removed argument
Fixed groupval() call in Vignette
XDE
changed the defaults for initialization of XdeParameter -- by default, no burnin, 1000 iterations. evaluate sessionInfo in vignette -- updated vignette
VanillaICE
updated how transition probabilities are passed to the viterbi. store emission probabilities in an array for HmmParameter
GOstats
Small modification to vignette.
Vignette had a FIXME that was missing a small but crucial detail.
Filled in.
biomaRt
Update for use of biomaRt in MySQL mode. Ensembl changed the port of the current database release and this needed a fix.
Biobase
Provide more informative messages when calling validity methods for classes exprSet and phenoData.
Large undertaking to make classes exprSet and phenoData classes defunct. See NEWS file for more information.