Bioconductor Changelog

Bioconductor Changelog

	About Click here to learn more about this blog. Packages Click on a link for updates to that package only. ABarray ACME AffyCompatible AffyExpress AnnBuilder AnnotationDbi ArrayExpress BAC BCRANK BGmix BSgenome BioMVCClass Biobase BiocCaseStudies Biostrings BiostringsCinterfaceDemo BufferedMatrix BufferedMatrixMethods CALIB CGHbase CGHcall CGHregions CMA CORREP Category CoCiteStats DEDS DFP DNAcopy DynDoc EBImage EBarrays GEOmetadb GEOquery GGBase GGexplorer GGtools GLAD GOstats GSEABase GSEAlm GeneMeta GeneR GeneRfold GeneSelector GeneSpring GeneTraffic GeneticsBase GeneticsDesign GeneticsPed GenomeGraphs GlobalAncova GraphAT GraphAlignment HELP HEM Harshlight Heatplus HilbertCurveDisplay IRanges ITALICS Icens KEGGSOAP LBE LMGene LPE LPEadj MANOR MCRestimate MLInterfaces MVCClass MantelCorr MassSpecWavelet MeasurementError.cor MergeMaid Mfuzz MiPP OCplus OLIN OLINgui OrderedList OutlierD PCpheno PGSEA PROcess RBGL RBioinf RDocBook RLMM RMAGEML ROC RSNPper RWebServices RankProd Ratlpow RbcBook1 Rdbi RdbiPgSQL Rdisop RefPlus Resourcerer Rgraphviz Ringo Rintact RpsiXML Rredland Rrsat Rswub Rtreemix Ruuid SAGx SBMLR SIM SLGI SLqPCR SMAP SNPchip ScISI SemSim ShortRead TypeInfo VanillaICE XDE aCGH adSplit affxparser affy affyContam affyMvout affyPLM affyPara affyQCReport affycomp affycoretools affyio affylmGUI affypdnn altcdfenvs annaffy annotate annotationTools apComplex aroma.light arrayMagic arrayQuality arrayQualityMetrics beadarray beadarraySNP bgafun bgx bioDist biocGraph biocViews biomaRt bridge buildBioC cellHTS cellHTS2 cghMCR clusterStab codelink convert copa cosmo cosmoGUI ctc daMA diffGeneAnalysis domainsignatures dualKS ecolitk edd exonmap explorase externalVector factDesign fbat fdrame flowClust flowCore flowDB flowQ flowUtils flowViz gaga gaggle gcrma genArise geneRecommender genefilter geneplotter globaltest goCluster goProfiles goTools gpls graph hexbin hopach hypergraph idiogram impute iterativeBMA iterativeBMAsurv keggorth lapmix limma limmaGUI logicFS lumi maCorrPlot maDB maSigPro maanova macat made4 maigesPack makePlatformDesign makecdfenv marray matchprobes mdqc metaArray miRNApath minet multiscan multtest ncdfExts nem nnNorm nudge occugene oligo oligoClasses oneChannelGUI ontoTools pairseqsim pamr panp pathRender pcaMethods pcot2 pdInfoBuilder pdmclass pgUtils pickgene pkgDepTools plateCore plgem plier plw ppiStats prada preprocessCore prism puma quantsmooth qvalue rHVDM rama rbsurv reb rflowcyt rhdf5 rsbml rtracklayer safe sagenhaft seqLogo sigPathway siggenes simpleaffy simulatorAPMS sizepower smoothMiner snapCGH snpMatrix spikeLI spkTools splicegear splots spotSegmentation sscore ssize stam stepNorm tilingArray timecourse tkWidgets topGO twilight vbmp vsn weaver webbioc widgetInvoke widgetTools xcms xcmsGUI xps yaqcaffy Subscribe Subscribe to the Bioconductor Changlog.	Thu, 28 Feb 2008 safe Replaced usage of soon to be defunct class exprSet with ExpressionSet. Add/delete files corrected Complete overhaul to version 2.0 [/safe] permanent link affyPLM Updated CHANGELOG to reflect changes to 1.15.6. Replaced reference to soon to be defunct class exprSet with ExpressionSet. [/affyPLM] permanent link pcaMethods Replaced usage of soon to be defunct class exprSet with ExpressionSet. [/pcaMethods] permanent link affycomp Replaced usage of soon to be defunct class exprSet with ExpressionSet. [/affycomp] permanent link multtest Replaced reference to soon to be defunct class exprSet with ExpressionSet. [/multtest] permanent link gaga Removed support for soon to be defunct class exprSet. [/gaga] permanent link affycoretools Removed support for soon to be defunct class exprSet. [/affycoretools] permanent link codelink svn ignore pdf in inst/doc. Experimental class CodelinkSet is now derived from ExpressionSet rather than eSet, allowing some nice integration with other pakcages (like limma). [/codelink] permanent link MVCClass Replaced reference to soon to be defunct class exprSet with ExpressionSet. [/MVCClass] permanent link hopach Replaced support of soon to be defunct class exprSet with ExpressionSet. [/hopach] permanent link EBarrays Removed support for soon to be defunct class exprSet. [/EBarrays] permanent link BufferedMatrixMethods (1.3.4) Make minor changes to what is printed to the screen when verbose=TRUE in BufferedMatrix.read.probematrix() and BufferedMatrix.justRMA() [/BufferedMatrixMethods] permanent link vsn Removed support for soon to be defunct class exprSet. [/vsn] permanent link convert Removed support for soon to be defunct class exprSet. [/convert] permanent link timecourse Replaced support for soon to be defunct class exprSet with ExpressionSet. [/timecourse] permanent link simpleaffy Replaced reference to soon to be defunct class exprSet with ExpressionSet. [/simpleaffy] permanent link globaltest Removed support for soon to be defunct class exprSet. Replaced reference to soon to be defunct class exprSet with ExpressionSet. [/globaltest] permanent link