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Bioconductor Changlog.
Wed, 20 Feb 2008
Biostrings
More work on the PDict() constructor (changed its signature, the length of the Trusted Dictionary must now be specified via the 'tb.width' arg instead of the 'tb.end' arg). Version bumped to 2.7.23.
BufferedMatrixMethods
(1.3.2) Add BufferedMatrix.bg.correct.normalize.quantiles() which does both RMA background correction and quantile normalization with a single function call.
(1.3.1) Add a NAMESPACE.
affyio and affy have been added as "Suggests" this aids the functions:
BufferedMatrix.read.celfiles() - read CEL file data straight into a BufferedMatrix
BufferedMatrix.read.probematrix() - read just the PM or MM probe intensities straight into a BufferedMatrix
BufferedMatrix.justRMA() - a low memory overhead RMA computing function
[/BufferedMatrixMethods] permanent link
xcms
Extended FTICR Vignette
Preparing for BioC 2.2 release
Added TandemMS and MSn vignette
Vignette for FTICR picking and Alignment
affyio
(1.7.13) read.celfile() now includes a additional argument allowing the user to specify reading only the intensity values from the specified CEL file (ie exclude STDEV and NPIXEL)