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Bioconductor Changlog.
Sat, 19 Jan 2008
AnnotationDbi
Fixes a bug in the display of chrlengths vectors
There was a bug in the creation of the chrlengths vectors that was
introduced with the 1.0 schema changes. Bug only affected the display
of the data and not the underlying data, so only AnnotationDbi needs
to be updated to clear this up.
[/AnnotationDbi] permanent link
GGtools
ok
new distro with pathways advanced query support
put in P41 number
various bugs in plot_EvG worked out
bgafun
Fixed error with the strsplit function
EBImage
new EBImage dll
maDB
no comment
PCpheno
fix description file
PGSEA
Version bump...
xcms
Fix handling of single-factor designs in xcmsSet().
Do not add a 'class' variable when setting phenoData.
Remove 'name' generic (too generic), replace with 'role' for stages and
'method' for protocols, which is just a rename of 'methodName'.
Also working on a fix for fillPeaks/getEIC where the raw pipeline should
produce an xcmsRaw (not an xcmsPeaks or anything else). This has
involved completely changing the semantics of the 'pipeline' method on
xcmsPipeline.
Warning: this commit is not tested - just getting the code out there.
some xcmsPeaks fixes
arrayQualityMetrics
Rnw corrected
New version including scores
[/arrayQualityMetrics] permanent link