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Bioconductor Changlog.
Tue, 08 Jan 2008
Biostrings
updating the consmat manual page
adding the FASTA files for two yeast genes
Added "as.character" and "consmat" methods for "BStringAlign" objects. No version bump.
Version finally bumped after a series of changes:
o matchPattern.Rnw vignette replaced by much improved GenomeSearching.Rnw
vignette (still a work-in-progress).
o reverse(), complement() and reverseComplement() now preserve desc(x) when
applied to BStringViews object x.
o matchPDict() now returns a PDictMatches object (new class) instead of a list
of integer vectors. The user can then subset this PDictMatches object with [[,
convert it into a list of integer vectors with as.list, or convert it into a
set of views on the original subject with extractMatches(). Other functions
can (and will) be added later in order to provide a wider choice of
efficient conversion/extraction tools.
WARNING: This is still a work-in-progress. Function names and semantics are
not yet stabilized!
MCRestimate
hello
big update many new features, individual votes for example
bug removed
PGSEA
...version bump...