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Bioconductor Changlog.
Wed, 12 Dec 2007
AnnotationDbi
Added Marc to the Author field. Updated dependencies. Version bump.
Clean up of the code in showQCdata()
Bug fix for shoqQCdata()
This time the bug fixes are actually in.
Fixed bugs in showQCdata()
This change just fixes the showQCdata function so that the counts are
displayed correctly.
Fixes a bug in the new shoqQCData function.
This function needs further work to get the mapped keys to be counted
correctly.
Cosmetic change only.
This adds a news section to the AnnotationDbi
This adds a news section to AnnotationDbi which will be used to
announce MAJOR "bullet point" changes that have been made to the
package since the last revision.
Modifications to schemas.
These are changes to the schema documentation so that they more
precisely align with what was in the sqlite files that are feeding
into AnnotationDbi. Also, code was added to
AnnotationDbi-internals.Rd so that it will not complain about the man
pages being in a sub-template within AnnotationDbi for the new
packages.
Applied Marc's big patch: switch to version 1.0 of the schemas + support for the Inparanoid packages + support for new PFAM.db + pkgname() function for displaying QC information. No version bump for now. inst/NEWS file is in preparation and will be added later.
[/AnnotationDbi] permanent link
GGtools
various changes to improve indexing in racExSet
oligoClasses
fixed db method for SnpLevelSet
added a check for the annotation package in the db method. Export db, chromosome and position
added man pages for chromosome and position
added accessors for feature information for SnpLevelSet
[/oligoClasses] permanent link
Rdisop
Bump version after successful build on all arches
cellHTS2
I fixed a bug in getZfactor.
Ringo
minor changes to VSN-related part of preprocessing functions that were made necessary by changes to the VSN package
GLAD
correction des WARNINGS
modification de la d?\195?\169pendance au package tcltk
plw
Fixed compilation warnings from gcc
Fixed Windows problem when loading ApoAI-data in vignette