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ABarray
ACME
AffyCompatible
AffyExpress
AnnBuilder
AnnotationDbi
ArrayExpress
BAC
BCRANK
BGmix
BSgenome
BioMVCClass
Biobase
BiocCaseStudies
Biostrings
BiostringsCinterfaceDemo
BufferedMatrix
BufferedMatrixMethods
CALIB
CGHbase
CGHcall
CGHregions
CMA
CORREP
Category
CoCiteStats
DEDS
DNAcopy
DynDoc
EBImage
EBarrays
GEOmetadb
GEOquery
GGBase
GGtools
GLAD
GOstats
GSEABase
GSEAlm
GeneMeta
GeneR
GeneRfold
GeneSelector
GeneSpring
GeneTraffic
GeneticsBase
GeneticsDesign
GeneticsPed
GenomeGraphs
GlobalAncova
GraphAT
GraphAlignment
HELP
HEM
Harshlight
Heatplus
Icens
KEGGSOAP
LBE
LMGene
LPE
LPEadj
MANOR
MCRestimate
MLInterfaces
MVCClass
MantelCorr
MassSpecWavelet
MeasurementError.cor
MergeMaid
Mfuzz
MiPP
OCplus
OLIN
OLINgui
OrderedList
OutlierD
PCpheno
PGSEA
PROcess
RBGL
RBioinf
RLMM
RMAGEML
ROC
RSNPper
RWebServices
RankProd
Ratlpow
RbcBook1
Rdbi
RdbiPgSQL
Rdisop
RefPlus
Resourcerer
Rgraphviz
Ringo
Rintact
Rredland
Rtreemix
Ruuid
SAGx
SBMLR
SIM
SLGI
SLqPCR
SMAP
SNPchip
ScISI
SemSim
ShortRead
TypeInfo
VanillaICE
XDE
aCGH
adSplit
affxparser
affy
affyPLM
affyPara
affyQCReport
affycomp
affycoretools
affyio
affylmGUI
affypdnn
altcdfenvs
annaffy
annotate
annotationTools
apComplex
aroma.light
arrayMagic
arrayQuality
arrayQualityMetrics
beadarray
beadarraySNP
bgafun
bgx
bioDist
biocGraph
biocViews
biomaRt
bridge
buildBioC
cellHTS
cellHTS2
cghMCR
clusterStab
codelink
convert
copa
cosmo
cosmoGUI
ctc
daMA
diffGeneAnalysis
ecolitk
edd
exonmap
explorase
externalVector
factDesign
fbat
fdrame
flowClust
flowCore
flowQ
flowUtils
flowViz
gaga
gaggle
gcrma
genArise
geneRecommender
genefilter
geneplotter
globaltest
goCluster
goProfiles
goTools
gpls
graph
hexbin
hopach
hypergraph
idiogram
impute
keggorth
lapmix
limma
limmaGUI
logicFS
lumi
maCorrPlot
maDB
maSigPro
maanova
macat
made4
maigesPack
makePlatformDesign
makecdfenv
marray
matchprobes
mdqc
metaArray
multtest
ncdfExts
nem
nnNorm
nudge
occugene
oligo
oligoClasses
oneChannelGUI
ontoTools
pairseqsim
pamr
panp
pathRender
pcaMethods
pcot2
pdInfoBuilder
pdmclass
pgUtils
pickgene
pkgDepTools
plateCore
plgem
plier
plw
ppiStats
prada
preprocessCore
prism
puma
quantsmooth
qvalue
rHVDM
rama
rbsurv
reb
rflowcyt
rhdf5
rsbml
rtracklayer
safe
sagenhaft
seqLogo
sigPathway
siggenes
simpleaffy
simulatorAPMS
sizepower
smoothMiner
snapCGH
snpMatrix
spikeLI
spkTools
splicegear
splots
spotSegmentation
sscore
ssize
stam
stepNorm
tilingArray
timecourse
tkWidgets
topGO
twilight
vbmp
vsn
weaver
webbioc
widgetInvoke
widgetTools
xcms
xcmsGUI
xps
yaqcaffy

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Rdisop
Added eXecute bit to libraries for Windows build
Added eXecute bit to libraries for Windows build

[/Rdisop] permanent link

macat
cleaned up documentation and source code

[/macat] permanent link

PGSEA
Added additional vignette - example PGSEA workflow
Added a minor documentation thing

[/PGSEA] permanent link

xcms
Added group(method=mzAlign), fixes in pipeline stuff

[/xcms] permanent link