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Bioconductor Changlog.
Wed, 31 Oct 2007
annotate
Changed default repository in htmlpage() from 'll' to
genefilter
I fixed replaced
fun=function(a,b) mad(a-b)
in the dist2 function by
fun=function(a,b) median(abs(a-b))
This makes more sense.
EBImage
finalized frameDist with distance, dot product and Pearson correlation
GSEABase
Add ComputedCollection class, and use for result of logic operations
- CollectionType Logic CollectionType --> CollectionType when identical
- all others, including identical CollectionIdType, lead to ComputedCollection
xcms
fixed bug which caused segfault when compiled with gcc >4.1
affyio
(1.7.5) Experimental pthreads based multi-threaded read_probematrix based on code contributed by Paul Gordon (U Calgary). A configure script detects if pthreads is installed on the system. If it is not the standard code is used. The environment variable R_THREADS is used to vary the number of threads. At the user level access to this function is via read.probematrix() in the affy package.
affycoretools
Small bug in vennSelectFC that resulted in incorrectly named fold change columns in the output.
[/affycoretools] permanent link
plateCore
Getting some extra columns for adding flowjo names to excel reports.
Added sample data, and added compensate for flowPate object.